Application of Artificial Intelligence in Drug Discovery and Development: Targeted Design and Toxicological Property Prediction
Research Article
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Application of Artificial Intelligence in Drug Discovery and Development: Targeted Design and Toxicological Property Prediction

Xinran Wang 1*
1 University of Toronto
*Corresponding author: xinranz.wang@mail.utoronto.ca
Published on 24 September 2025
Journal Cover
TNS Vol.137
ISSN (Print): 2753-8826
ISSN (Online): 2753-8818
ISBN (Print): 978-1-80590-371-0
ISBN (Online): 978-1-80590-372-7
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Abstract

Traditional technologies for new drug research and development face numerous challenges, such as the lack of high-success-rate tools for virtual design of drug molecules based on protein three-dimensional structures (a limitation to research and development efficiency), the absence of reliable methods for generating new scaffold drug molecules, and a shortage of fast, reliable, low-cost models for drug toxicology prediction. AI can accurately predict protein structures to accelerate target design, efficiently generate new scaffold molecules adapted to targets, and greatly enhance the generalization ability of protein-ligand binding predictions. Some AI models have shown excellent performance in pharmacotoxicology prediction and treatment evaluation. These new technologies significantly shorten research and development cycles, reduce costs, improve prediction accuracy and efficiency, and drive the transformation of new drug research and development from experience-driven to data-driven approaches. This article reviews the application status and progress of AI tools in drug research and development, which focuses on two areas: AI-driven cancer drug target identification and optimization, and toxicology prediction and evaluation tools.

Keywords:

Artificial Intelligence, Targeted Drug Design, Toxicology Prediction, Tamgen

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Wang,X. (2025). Application of Artificial Intelligence in Drug Discovery and Development: Targeted Design and Toxicological Property Prediction. Theoretical and Natural Science,137,8-12.

References

[1]. Bajwa, J., Munir, U., Nori, A. and Williams, B. (2021) Artificial intelligence in healthcare: transforming the practice of medicine. Future Healthcare Journal, 8(2), e188-e194.

[2]. Bender, A. and Cortes-Ciriano, I. (2021) Artificial intelligence in drug discovery: what is realistic, what are illusions? Part 2: a discussion of chemical and biological data. Drug Discovery Today, 26(4), 1040-1052.

[3]. Wu, H.C., Chang, D.K. and Huang, C.T. (2006) Targeted therapy for cancer. Journal of Cancer Molecules, 2(2), 57-66.

[4]. Ren, F., Ding, X., Zheng, M., Korzinkin, M., Cai, X., Zhu, W., Mantsyzov, A., Aliper, A., Aladinskiy, V., Cao, Z., Kong, S., Long, X., Liu, B. H. M., Liu, Y., Naumov, V., Shneyderman, A., Ozerov, I. V., Wang, J., Pun, F. W., Polykovskiy, D. A., Sun, C., Levitt, M., Aspuru-Guzik, A. and Zhavoronkov, A. (2022) AlphaFold Accelerates Artificial Intelligence Powered Drug Discovery: Efficient Discovery of a Novel Cyclin-dependent Kinase 20 (CDK20) Small Molecule Inhibitor. Chemical Science, 14(6), 1443-1452.

[5]. Wu, K., Xia, Y., Deng, P., Liu, R., Zhang, Y., Guo, H., Cui, Y., Pei, Q., Wu, L., Xie, S., Chen, S., Lu, X., Hu, S., Wu, J., Chan, C.-K., Chen, S., Zhou, L., Yu, N., Chen, E., Liu, H., Guo, J., Qin, T. and Liu, T-Y. (2024) TamGen: drug design with target-aware molecule generation through a chemical language model. Nature Communications, 15, Article 9360.

[6]. Chatterjee, A., Walters, R., Shafi, Z., Ahmed, O. S., Sebek, M., Gysi, D., Yu, R., Eliassi-Rad, T., Barabási, A-L. and Menichetti, G. (2023) Improving the generalizability of protein-ligand binding predictions with AI-Bind. Nat Commun. 14(1), 1989.

[7]. Sederman, C., Di Sera, T., Qiao, Y., Huang, X., Welm, B. E., Welm, A. L. and Marth, G. (2024) Abstract 907: ScreenDL: A transfer learning framework integrating tumor omics and functional drug screening for personalized clinical drug response prediction. Cancer Research, 84(6_Supplement), 907.

[8]. Tan, S., Ding, Y., Wang, W., Rao, J., Cheng, F., Zhang, Q., Xu, T., Hu, T., Hu, Q., Ye, Z., Yan, X., Wang, X., Li, M., Xie, P., Chen, Z., Liang, G., Pu, Y., Zhang, J. and Gu, Z. (2025) Development of an AI Model for DILI-Level Prediction Using Liver Organoid Brightfield Images. Commun. Biol., 8, Article 886.

[9]. Richard, A. M., Huang, R., Waidyanatha, S., Shinn, P., Collins, B. J., Thillainadarajah, I., Grulke, C. M., Williams, A. J., Lougee, R. R., Judson, R. S., Houck, K. A., Shobair, M., Yang, C., Rathman, J. F., Yasgar, A., Fitzpatrick, S. C., Simeonov, A., Thomas, R. S., Crofton, K. M., Paules, R. S., Bucher, J. R., Austin, C. P., Kavlock, R. J. and Tice, R. R. (2021) The Tox21 10K Compound Library: Collaborative Chemistry Advancing Toxicology. Chemical Research in Toxicology, 34(2), 189-216.

[10]. Di Stefano, M., Galati, S., Piazza, L., Granchi, C., Mancini, S., Fratini, F., Macchia, M., Poli, G. and Tuccinardi, T. (2024) VenomPred 2.0: A Novel In Silico Platform for an Extended and Human Interpretable Toxicological Profiling of Small Molecules. Journal of Chemical Information and Modeling, 64(7), 2275-2289.

Cite this article

Wang,X. (2025). Application of Artificial Intelligence in Drug Discovery and Development: Targeted Design and Toxicological Property Prediction. Theoretical and Natural Science,137,8-12.

Data availability

The datasets used and/or analyzed during the current study will be available from the authors upon reasonable request.

About volume

Volume title: Proceedings of ICBioMed 2025 Symposium: AI for Healthcare: Advanced Medical Data Analytics and Smart Rehabilitation

ISBN: 978-1-80590-371-0(Print) / 978-1-80590-372-7(Online)
Editor: Alan Wang
Conference date: 17 October 2025
Series: Theoretical and Natural Science
Volume number: Vol.137
ISSN: 2753-8818(Print) / 2753-8826(Online)